Field3D
|
Contains various utility functions for Hdf5. More...
#include <string>
#include <exception>
#include <vector>
#include <boost/lexical_cast.hpp>
#include <boost/thread/mutex.hpp>
#include <boost/thread/recursive_mutex.hpp>
#include <hdf5.h>
#include "Exception.h"
#include "Traits.h"
#include "Field.h"
#include "ns.h"
Go to the source code of this file.
Classes | |
class | Hdf5Util::H5Base |
Base class for all scoped Hdf5 util classes. More... | |
class | Hdf5Util::H5ScopedAget_space |
Scoped object - opens an attribute data space on creation and closes it on destruction. More... | |
class | Hdf5Util::H5ScopedAget_type |
Scoped object - opens an attribute data type on creation and closes it on destruction. More... | |
class | Hdf5Util::H5ScopedAopen |
Scoped object - Opens attribute by name and closes it on destruction. More... | |
class | Hdf5Util::H5ScopedAopenIdx |
Scoped object - Opens attribute by index and closes it on destruction. More... | |
class | Hdf5Util::H5ScopedDcreate |
Scoped object - creates a dataset on creation and closes it on destruction. More... | |
class | Hdf5Util::H5ScopedDget_space |
Scoped object - opens a dataset on creation and closes it on destruction. More... | |
class | Hdf5Util::H5ScopedDget_type |
Scoped object - opens a dataset on creation and closes it on destruction. More... | |
class | Hdf5Util::H5ScopedDopen |
Scoped object - opens a dataset on creation and closes it on destruction. More... | |
class | Hdf5Util::H5ScopedGcreate |
Scoped object - creates a group on creation and closes it on destruction. More... | |
class | Hdf5Util::H5ScopedGopen |
Scoped object - opens a group on creation and closes it on destruction. More... | |
class | Hdf5Util::H5ScopedScreate |
Scoped object - creates a dataspace on creation and closes it on destruction. More... | |
class | Hdf5Util::H5ScopedTget_native_type |
Scoped object - opens an native type id on creation and closes it on destruction. More... | |
Namespaces | |
Hdf5Util | |
Contains utility functions and classes for Hdf5 files. | |
Typedefs | |
typedef boost::recursive_mutex::scoped_lock | GlobalLock |
Functions | |
FIELD3D_API bool | Hdf5Util::checkHdf5Gzip () |
Checks whether gzip is available in the current hdf5 library. More... | |
Read/write simple data to hdf5 location | |
template<typename T > | |
void | Hdf5Util::readSimpleData (hid_t location, const std::string &name, std::vector< T > &data) |
Reads a simple linear data set from the given location. More... | |
template<typename T > | |
void | Hdf5Util::writeSimpleData (hid_t location, const std::string &name, const std::vector< T > &data) |
Writes a simple linear data set to the given location. More... | |
Attribute reading | |
FIELD3D_API bool | Hdf5Util::readAttribute (hid_t location, const std::string &attrName, std::string &value) |
Reads a string attribute. More... | |
FIELD3D_API bool | Hdf5Util::readAttribute (hid_t location, const std::string &attrName, std::vector< unsigned int > &attrSize, double &value) |
Reads a double attribute of arbitrary size and rank. More... | |
FIELD3D_API bool | Hdf5Util::readAttribute (hid_t location, const std::string &attrName, std::vector< unsigned int > &attrSize, float &value) |
Reads a float attribute of arbitrary size and rank. More... | |
FIELD3D_API bool | Hdf5Util::readAttribute (hid_t location, const std::string &attrName, std::vector< unsigned int > &attrSize, int &value) |
Reads a int attribute of arbitrary size and rank. More... | |
FIELD3D_API bool | Hdf5Util::readAttribute (hid_t location, const std::string &attrName, unsigned int attrSize, double &value) |
Reads a double attribute of arbitrary size. More... | |
FIELD3D_API bool | Hdf5Util::readAttribute (hid_t location, const std::string &attrName, unsigned int attrSize, float &value) |
Reads a float attribute of arbitrary size. More... | |
FIELD3D_API bool | Hdf5Util::readAttribute (hid_t location, const std::string &attrName, unsigned int attrSize, int &value) |
Reads an int attribute of arbitrary size. More... | |
Attribute writing | |
FIELD3D_API bool | Hdf5Util::writeAttribute (hid_t location, const std::string &attrName, const std::string &value) |
Writes a string attribute. More... | |
FIELD3D_API bool | Hdf5Util::writeAttribute (hid_t location, const std::string &attrName, std::vector< unsigned int > &attrSize, const double &value) |
Writes a double attribute of arbitrary size and rank. More... | |
FIELD3D_API bool | Hdf5Util::writeAttribute (hid_t location, const std::string &attrName, std::vector< unsigned int > &attrSize, const float &value) |
Writes a float attribute of arbitrary size and rank. More... | |
FIELD3D_API bool | Hdf5Util::writeAttribute (hid_t location, const std::string &attrName, std::vector< unsigned int > &attrSize, const int &value) |
Writes a float attribute of arbitrary size and rank. More... | |
FIELD3D_API bool | Hdf5Util::writeAttribute (hid_t location, const std::string &attrName, unsigned int attrSize, const double &value) |
Writes a double attribute of arbitrary size. More... | |
FIELD3D_API bool | Hdf5Util::writeAttribute (hid_t location, const std::string &attrName, unsigned int attrSize, const float &value) |
Writes a float attribute of arbitrary size. More... | |
FIELD3D_API bool | Hdf5Util::writeAttribute (hid_t location, const std::string &attrName, unsigned int attrSize, const int &value) |
Writes an int attribute of arbitrary size. More... | |
Variables | |
FIELD3D_NAMESPACE_OPEN FIELD3D_API boost::recursive_mutex | g_hdf5Mutex |
Contains various utility functions for Hdf5.
Definition in file Hdf5Util.h.
typedef boost::recursive_mutex::scoped_lock GlobalLock |
Definition at line 78 of file Hdf5Util.h.
FIELD3D_NAMESPACE_OPEN FIELD3D_API boost::recursive_mutex g_hdf5Mutex |
Definition at line 67 of file Hdf5Util.cpp.
Referenced by Hdf5Util::checkHdf5Gzip(), Field3DFileHDF5Base::closeInternal(), Hdf5Util::H5ScopedScreate::create(), Field3DOutputFileHDF5::create(), Field3DOutputFileHDF5::createNewPartition(), Field3DFileHDF5Base::Field3DFileHDF5Base(), Hdf5Util::H5ScopedAget_space::H5ScopedAget_space(), Hdf5Util::H5ScopedAget_type::H5ScopedAget_type(), Hdf5Util::H5ScopedAopen::H5ScopedAopen(), Hdf5Util::H5ScopedAopenIdx::H5ScopedAopenIdx(), Hdf5Util::H5ScopedDcreate::H5ScopedDcreate(), Hdf5Util::H5ScopedGcreate::H5ScopedGcreate(), Hdf5Util::H5ScopedTget_native_type::H5ScopedTget_native_type(), Hdf5Util::H5ScopedGopen::open(), Hdf5Util::H5ScopedDopen::open(), Hdf5Util::H5ScopedDget_space::open(), Hdf5Util::H5ScopedDget_type::open(), Field3DInputFileHDF5::open(), SparseFile::Reference< Data_T >::openFile(), InputFileHDF5::parseLayers(), InputFileHDF5::parsePartitions(), Hdf5Util::readAttribute(), SparseDataReader< Data_T >::readBlock(), SparseDataReader< Data_T >::readBlockList(), Field3DInputFileHDF5::readGroupMembership(), Field3DInputFileHDF5::readLayer(), Field3DInputFileHDF5::readMetadata(), Field3DInputFileHDF5::readPartitionAndLayerInfo(), Field3DInputFileHDF5::readProxyLayer(), Hdf5Util::readSimpleData(), Hdf5Util::writeAttribute(), Field3DOutputFileHDF5::writeGlobalMetadata(), Field3DOutputFileHDF5::writeGroupMembership(), Field3DOutputFileHDF5::writeLayer(), Field3DOutputFileHDF5::writeMapping(), Hdf5Util::writeSimpleData(), Hdf5Util::H5ScopedAget_space::~H5ScopedAget_space(), Hdf5Util::H5ScopedAget_type::~H5ScopedAget_type(), Hdf5Util::H5ScopedAopen::~H5ScopedAopen(), Hdf5Util::H5ScopedAopenIdx::~H5ScopedAopenIdx(), Hdf5Util::H5ScopedDcreate::~H5ScopedDcreate(), Hdf5Util::H5ScopedDget_space::~H5ScopedDget_space(), Hdf5Util::H5ScopedDget_type::~H5ScopedDget_type(), Hdf5Util::H5ScopedDopen::~H5ScopedDopen(), Hdf5Util::H5ScopedGcreate::~H5ScopedGcreate(), Hdf5Util::H5ScopedGopen::~H5ScopedGopen(), Hdf5Util::H5ScopedScreate::~H5ScopedScreate(), and Hdf5Util::H5ScopedTget_native_type::~H5ScopedTget_native_type().